• Atkinson's Factory
• Barrett's Factory
• Belle Isle Prison
• "The Cage"
• Castle Godwin
• Castle Lightning (aka Castle Griswold, Castle Booker)
• Castle Thunder Military Prison
• Crew & Pemberton's Warehouse Prison (General Hospital #15)
• Franklin Street Guard House
• General Hospital #21 
• General Hospital #22 (aka Howard's Factory Prison)
• Grant's Factory (General Hospital #12)
• Harwood's Factory (General Hospital #24)
• Libby Prison
• Liggon's Prison (General Hospital #23)
• "Officer's Prison on 18th Street"
• Prison Depot (early war)
• "Prison opposite Castle Thunder" (Palmer's buildings)
• Ross Factory Hospital (aka Main Street Hospital)
• Scott's Factory Prison
• Second Alabama Hospital (aka Turpin & Yarbrough's Factory Prison)
• Smith Factory Prison
• State Penitentiary

General references to Prisons in Richmond during the war

Harris, Lieut. William C., Prison-Life in the Tobacco Warehouse at Richmond. By a Ball's Bluff Prisoner. Philadelphia: George W. Childs, 1862.